microsoft/bioemu v.1.2.0

1.2.0

Repository: microsoft/bioemu

Tag: v.1.2.0

Published: 2025-11-24T11:16:01Z

Prerelease: no

Release notes:

What's Changed

• Toy example of PPFT training by @sarahnlewis in https://github.com/microsoft/bioemu/pull/134
• Check input sequence validity by @josejimenezluna in https://github.com/microsoft/bioemu/pull/130
• Various documentation and error message updates by @franknoe @josejimenezluna @sarahnlewis
• Default model changed by @josejimenezluna in https://github.com/microsoft/bioemu/pull/136
• Updates to the DPM solver by @YuuuXie in https://github.com/microsoft/bioemu/pull/148 and https://github.com/microsoft/bioemu/pull/151
• Use KDTree instead of mdtraj.compute_contacts in _filter_unphysical_traj_masks to mitigate MemoryError and improve performance by @ahmedselim2017 in https://github.com/microsoft/bioemu/pull/158
• Support extra_residue_embeds by @sarahnlewis in https://github.com/microsoft/bioemu/pull/174
• By default, use system time for random seed, not zero by @sarahnlewis in https://github.com/microsoft/bioemu/pull/180

New Contributors

• @ahmedselim2017 made their first contribution in https://github.com/microsoft/bioemu/pull/160

Full Changelog: https://github.com/microsoft/bioemu/compare/v.0.1.12...v.1.2.0