google-deepmind/alphafold v2.3.2

Alphafold v2.3.2

Repository: google-deepmind/alphafold

Tag: v2.3.2

Published: 2023-04-05T09:45:53Z

Prerelease: no

Release notes: Change log

• More robust download in Colab with shutil (thanks @gmihaila).
• Added ability to only run relax for the best unrelaxed model in the run_alphafold.py.
• Improved documentation for the ranked outputs (thanks @ulupo).
• Removed jax dependency from results pkl.
• Updated tensorflow to 2.11.0.
• Improved documentation on how to install aria2c (thanks @janxkoci).
• Made _chem_comp.type logic case-insensitive for mmCIF parsing.
• Improved error messages when cells are submitted out of order in Colab (e.g. when the runtime restarts).
• Fixed incorrect type annotations.
• Bumped Python to 3.9 in Colab.
• Improved robustness of masked softmax for bfloat16.
• Bumped pyopenssl in Colab to patch cryptography dependency issue.